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The complete chloroplast genome of the essential medicinal herb, Amomum Villosum (Zingiberaceae)
Han, YW1; Zhang, WX1; Zeng, P1; Hu, H1; Wang, YT1; Cai, J2
2019
Source PublicationMITOCHONDRIAL DNA PART B-RESOURCES
ISSN2380-2359
Volume4Issue:1Pages:1798-1799
Abstract

 

Amomum villosum Lour. is a medicinal herb of high economic value, which is endemic to southern China. The size of A. villosum chloroplast (cp) genome was 163,733 bp long, which consisted of long (LSC; 88,798 bp) and short (SSC; 15,353 bp) single-copy regions, separated by a pair of inverted repeats (IRs; 29,791 bp for each unit). Totally, 126 genes are annotated in the cp genome, including 88 protein-coding genes (PCGs), 30 transfer RNA genes (tRNAs), and 8 ribosomal RNA genes (rRNAs). The overall GC content is 36.1%. The phylogenetic analysis based on 43 conserved protein-coding genes from 32 plant species recovered a consistent phylogeny on most of the nodes with previous results and indicated A. villosum as the sister species of the common ancestor of A. compactum and A. krervanh, and suggested that the cp genome data can effectively resolve the phylogenetic relationships. Our study provides a valuable resource for further study on its genetic diversification, evolution and germplasm conservation of this valued medicinal plant.

KeywordAmomum Villosum Phylogeny Chloroplast Genome Medicinal Herb
DOI10.1080/23802359.2019.1612713
Indexed BySCI
Language英语
WOS Research AreaGenetics & Heredity
WOS SubjectGenetics & Heredity
WOS IDWOS:000467817000001
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Cited Times [WOS]:1   [WOS Record]     [Related Records in WOS]
Document TypeJournal article
CollectionInstitute of Chinese Medical Sciences
Affiliation1.State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macau, China
2.Research Center for Ecology and Environmental Sciences, Northwestern Polytechnical University, Xian, China
First Author AffilicationInstitute of Chinese Medical Sciences
Recommended Citation
GB/T 7714
Han, YW,Zhang, WX,Zeng, P,et al. The complete chloroplast genome of the essential medicinal herb, Amomum Villosum (Zingiberaceae)[J]. MITOCHONDRIAL DNA PART B-RESOURCES,2019,4(1):1798-1799.
APA Han, YW,Zhang, WX,Zeng, P,Hu, H,Wang, YT,&Cai, J.(2019).The complete chloroplast genome of the essential medicinal herb, Amomum Villosum (Zingiberaceae).MITOCHONDRIAL DNA PART B-RESOURCES,4(1),1798-1799.
MLA Han, YW,et al."The complete chloroplast genome of the essential medicinal herb, Amomum Villosum (Zingiberaceae)".MITOCHONDRIAL DNA PART B-RESOURCES 4.1(2019):1798-1799.
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