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Recent Progress in the Discovery and Design of Antimicrobial Peptides Using Traditional Machine Learning and Deep Learning Journal article
Antibiotics, 2022,Volume: 11,Issue: 10
Authors:  Yan, Jielu;  Cai, Jianxiu;  Zhang, Bob;  Wang, Yapeng;  Wong, Derek F.;  Siu, Shirley W.I.
Favorite |  | TC[WOS]:0 TC[Scopus]:0 | Submit date:2022/11/07
Antimicrobial Peptide  Classification  Deep Learning  Machine Learning  Medicine  Regression  Therapeutic Peptide  
Multi-Branch-CNN: Classification of ion channel interacting peptides using multi-branch convolutional neural network Journal article
Computers in Biology and Medicine, 2022,Volume: 147
Authors:  Yan, Jielu;  Zhang, Bob;  Zhou, Mingliang;  Kwok, Hang Fai;  Siu, Shirley W.I.
Favorite |  | TC[WOS]:4 TC[Scopus]:4 | Submit date:2022/08/01
Classification  Deep Learning  Drug Discovery  Ion Channel  Multi-branch-cnn  Peptides  
LigTMap: ligand and structure-based target identification and activity prediction for small molecular compounds Journal article
Journal of Cheminformatics, 2021,Volume: 13,Issue: 1
Authors:  Shaikh, Faraz;  Tai, Hio Kuan;  Desai, Nirali;  Siu, Shirley W.I.
Favorite |  | TC[WOS]:3 TC[Scopus]:4 | Submit date:2021/12/09
Binding Affinity Prediction  Binding Interaction Fingerprint  Drug Repurposing  Fingerprint Similarity  Inverse Docking  Psovina  Random Forest  Target Prediction  
Chemical toxicity prediction based on semi-supervised learning and graph convolutional neural network Journal article
Journal of Cheminformatics, 2021,Volume: 13,Issue: 1
Authors:  Chen, Jiarui;  Si, Yain Whar;  Un, Chon Wai;  Siu, Shirley W.I.
Favorite |  | TC[WOS]:2 TC[Scopus]:2 | Submit date:2021/12/08
Admet  Chemical Toxicity  Deep Learning  Graph Convolutional Neural Network  Mean Teacher  Semi-supervised Learning  Tox21  
XDeep-AcPEP: Deep Learning Method for Anticancer Peptide Activity Prediction Based on Convolutional Neural Network and Multitask Learning Journal article
Journal of Chemical Information and Modeling, 2021,Volume: 61,Issue: 8,Page: 3789-3803
Authors:  Chen, Jiarui;  Cheong, Hong Hin;  Siu, Shirley W.I.
Favorite |  | TC[WOS]:9 TC[Scopus]:10 | Submit date:2021/12/08
Aggregation and its influence on the bioactivities of a novel antimicrobial peptide, temporin-pf, and its analogues Journal article
International Journal of Molecular Sciences, 2021,Volume: 22,Issue: 9
Authors:  Zai, Yu;  Xi, Xinping;  Ye, Zhuming;  Ma, Chengbang;  Zhou, Mei;  Chen, Xiaoling;  Siu, Shirley W.I.;  Chen, Tianbao;  Wang, Lei;  Kwok, Hang Fai
Favorite |  | TC[WOS]:6 TC[Scopus]:8 | Submit date:2021/12/07
Antimicrobial Activity  Md Simulation  Peptide Aggregation  Temporin  
Effect of Concentration, Chain Length, Hydrophobicity, and an External Electric Field on the Growth of Mixed Alkanethiol Self-Assembled Monolayers: A Molecular Dynamics Study Journal article
Langmuir, 2021,Volume: 37,Issue: 5,Page: 1913-1924
Authors:  Bhadra, Pratiti;  Siu, Shirley W.I.
Favorite |  | TC[WOS]:3 TC[Scopus]:3 | Submit date:2021/12/07
GWOVina: A grey wolf optimization approach to rigid and flexible receptor docking Journal article
Chemical Biology and Drug Design, 2021,Volume: 97,Issue: 1,Page: 97-110
Authors:  Wong, Kin Meng;  Tai, Hio Kuan;  Siu, Shirley W.I.
Favorite |  | TC[WOS]:7 TC[Scopus]:8 | Submit date:2021/12/07
Autodock Vina  Gwovina  Nature-inspired Algorithm  Protein–ligand Docking  Side-chain Flexibility  Structure-based Drug Design  Swarm Intelligence  
A novel bioengineered fragment peptide of Vasostatin-1 exerts smooth muscle pharmacological activities and anti-angiogenic effects via blocking VEGFR signalling pathway Journal article
Computational and Structural Biotechnology Journal, 2021,Volume: 19,Page: 2664-2675
Authors:  Wei, Ran;  Wu, Qiushuang;  Ai, Nana;  Wang, Lei;  Zhou, Mei;  Shaw, Chris;  Chen, Tianbao;  Ye, Richard Dequan;  Ge, Wei;  Siu, Shirley W.I.;  Kwok, Hang Fai
Favorite |  | TC[WOS]:1 TC[Scopus]:1 | Submit date:2021/09/17
Anti-angiogenesis  Chromogranin a  Vasostatin-1  Vegfr2  
White learning methodology: A case study of cancer-related disease factors analysis in real-time PACS environment Journal article
Computer Methods and Programs in Biomedicine, 2020,Volume: 197
Authors:  Tengyue Li;  Simon Fong;  Shirley W.I. Siu;  Xin-she Yang;  Lian-Sheng Liu;  Sabah Mohammed
Favorite |  | TC[WOS]:3 TC[Scopus]:3 | Submit date:2021/03/09
Data Mining Methodology  Deep Learning  Bayesian Network  Radiological Data Analysis