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Chemical toxicity prediction based on semi-supervised learning and graph convolutional neural network Journal article
Journal of Cheminformatics, 2021,Volume: 13,Issue: 1
Authors:  Chen, Jiarui;  Si, Yain Whar;  Un, Chon Wai;  Siu, Shirley W.I.
Favorite |  | TC[WOS]:0 TC[Scopus]:0 | Submit date:2021/12/08
Admet  Chemical Toxicity  Deep Learning  Graph Convolutional Neural Network  Mean Teacher  Semi-supervised Learning  Tox21  
Toxic Peptide From Palythoa caribaeorum Acting on the TRPV1 Channel Prevents Pentylenetetrazol-Induced Epilepsy in Zebrafish Larvae Journal article
Frontiers in Pharmacology, 2021,Volume: 12
Authors:  Wang, Xiufen;  Liao, Qiwen;  Chen, Hanbin;  Gong, Guiyi;  Siu, Shirley Weng In;  Chen, Qian;  Kam, Hiotong;  Ung, Carolina Oi Lam;  Cheung, Kwok Kuen;  Rádis-Baptista, Gandhi;  Wong, Clarence Tsun Ting;  Lee, Simon Ming Yuen
Favorite |  | TC[WOS]:0 TC[Scopus]:0 | Submit date:2022/01/14
Anti-epilepsy  Pcactx Peptide  Transcriptomics Analysis  Trpv1 Channel  Zebrafish  Zoantharian  
LigTMap: ligand and structure-based target identification and activity prediction for small molecular compounds Journal article
Journal of Cheminformatics, 2021,Volume: 13,Issue: 1
Authors:  Shaikh, Faraz;  Tai, Hio Kuan;  Desai, Nirali;  Siu, Shirley W.I.
Favorite |  | TC[WOS]:1 TC[Scopus]:1 | Submit date:2021/12/09
Binding Affinity Prediction  Binding Interaction Fingerprint  Drug Repurposing  Fingerprint Similarity  Inverse Docking  Psovina  Random Forest  Target Prediction  
XDeep-AcPEP: Deep Learning Method for Anticancer Peptide Activity Prediction Based on Convolutional Neural Network and Multitask Learning Journal article
Journal of Chemical Information and Modeling, 2021,Volume: 61,Issue: 8,Page: 3789-3803
Authors:  Chen, Jiarui;  Cheong, Hong Hin;  Siu, Shirley W.I.
Favorite |  | TC[WOS]:0 TC[Scopus]:0 | Submit date:2021/12/08
Aggregation and its influence on the bioactivities of a novel antimicrobial peptide, temporin-pf, and its analogues Journal article
International Journal of Molecular Sciences, 2021,Volume: 22,Issue: 9
Authors:  Zai, Yu;  Xi, Xinping;  Ye, Zhuming;  Ma, Chengbang;  Zhou, Mei;  Chen, Xiaoling;  Siu, Shirley W.I.;  Chen, Tianbao;  Wang, Lei;  Kwok, Hang Fai
Favorite |  | TC[WOS]:3 TC[Scopus]:5 | Submit date:2021/12/07
Antimicrobial Activity  Md Simulation  Peptide Aggregation  Temporin  
Effect of Concentration, Chain Length, Hydrophobicity, and an External Electric Field on the Growth of Mixed Alkanethiol Self-Assembled Monolayers: A Molecular Dynamics Study Journal article
Langmuir, 2021,Volume: 37,Issue: 5,Page: 1913-1924
Authors:  Bhadra, Pratiti;  Siu, Shirley W.I.
Favorite |  | TC[WOS]:1 TC[Scopus]:2 | Submit date:2021/12/07
A novel bioengineered fragment peptide of Vasostatin-1 exerts smooth muscle pharmacological activities and anti-angiogenic effects via blocking VEGFR signalling pathway Journal article
Computational and Structural Biotechnology Journal, 2021,Volume: 19,Page: 2664-2675
Authors:  Wei, Ran;  Wu, Qiushuang;  Ai, Nana;  Wang, Lei;  Zhou, Mei;  Shaw, Chris;  Chen, Tianbao;  Ye, Richard Dequan;  Ge, Wei;  Siu, Shirley W.I.;  Kwok, Hang Fai
Favorite |  | TC[WOS]:0 TC[Scopus]:1 | Submit date:2021/09/17
Anti-angiogenesis  Chromogranin a  Vasostatin-1  Vegfr2  
GWOVina: A grey wolf optimization approach to rigid and flexible receptor docking Journal article
Chemical Biology and Drug Design, 2021,Volume: 97,Issue: 1,Page: 97-110
Authors:  Wong, Kin Meng;  Tai, Hio Kuan;  Siu, Shirley W.I.
Favorite |  | TC[WOS]:3 TC[Scopus]:3 | Submit date:2021/12/07
Autodock Vina  Gwovina  Nature-inspired Algorithm  Protein–ligand Docking  Side-chain Flexibility  Structure-based Drug Design  Swarm Intelligence  
Novel venom-based peptides (P13 and its derivative - M6) to maintain self-renewal of human embryonic stem cells by activating FGF and TGFβ signaling pathways Journal article
Stem Cell Research and Therapy, 2020,Volume: 11,Issue: 1
Authors:  Ma,Rui;  Ren,Zhili;  Li,Bin;  Siu,Shirley W.I.;  Chen,Guokai;  Kwok,Hang Fai
Favorite |  | TC[WOS]:2 TC[Scopus]:2 | Submit date:2021/03/04
Embryonic Stem Cell  Peptide Modification  Pluripotency  Self-renewal  Venom Peptide  
Deep-AmPEP30: Improve Short Antimicrobial Peptides Prediction with Deep Learning Journal article
Molecular Therapy - Nucleic Acids, 2020,Volume: 20,Page: 882-894
Authors:  Yan,Jielu;  Bhadra,Pratiti;  Li,Ang;  Sethiya,Pooja;  Qin,Longguang;  Tai,Hio Kuan;  Wong,Koon Ho;  Siu,Shirley W.I.
Favorite |  | TC[WOS]:39 TC[Scopus]:40 | Submit date:2021/03/04
Ampep  Ampicillin  Antimicrobial Peptide  Axpep  Candida Glabrata  Convolutional Neural Network  Drug Discovery  Machine Learning  Reduced Amino Acid Composition